Access the workflow profiles

The profile subcommand provides several commands to manage the workflow profiles. Profiles are used to define different configurations for the workflow e.g. you can configure how the workflow will run on a HPC. You can read more about profiles in the Snakemake documentation.

Note

For snk to be able to access the profiles, the profiles must be located in the profiles directory of the workflow.

List

List the profiles in the workflow.

snk-basic-pipeline profile list

Show

The show command will display the contents of a profile.

snk-basic-pipeline profile show slurm